Transcriptional Regulator

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Transcriptional Regulator
  Conformer 1
(PDB) 		2o0y (B)
  Conformer 2
(PDB) 		2o0y (D)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 172 1.0   81 - 254
2 57 0.28   23 - 80

Sequence


           ______________________________________________________________________80________________________________________________ 
 2o0y(B) : *********AGVRSVTRVIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATcARSVLTSRADGSYSLGPElRWVRLAGRTWAPPEEVVDIrQLSADTGETVNLYIRQGLSRVVVAQC 
         :                                                                                                                          
 2o0y(D) : SAEKPAVADAGVRSVTRVIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATcARSVLTSRADGSYSLGPElRWVRLAGRTWAPPEEVVDIrQLSADTGETVNLYIRQGLSRVVVAQC 
           ______________________________________________________________________80________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2o0y(B) : ESTATVRSVIPLGVPYPLWAGAAGKILLLAAPELIDDVAADSPHGPEFADQLREKVEDGRERGYQLVHGERELGSSGLSFPLVDSHGTVVAALTLGGPTGRFTEDRTPHYIECTRAAAEE 
         :                                                                                                                          
 2o0y(D) : ESTATVRSVIPLGVPYPLWAGAAGKILLLAAPELIDDVAADSPHGPEFADQLREKVEDGRERGYQLVHGERELGSSGLSFPLVDSHGTVVAALTLGGPTGRFTEDRTPHYIECTRAAAEE 
           ________________________________________________________________________________________________________________________ 

           __________                                                                                                               
 2o0y(B) : ISAIGLPGLD                                                                                                               
         :                                                                                                                          
 2o0y(D) : ISAIGLPGLD                                                                                                               
           __________                                                                                                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		4.0
Translation
(A) 		1.7
Closure
(%) 		54.6
Bending Residues
( green ) 		  80 - 81
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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