Trichosanthin Delta C7

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Trichosanthin Delta C7
  Conformer 1
(PDB) 		1j4g (C)
  Conformer 2
(PDB) 		1j4g (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 122 0.64   5 - 14   19 - 38   44 - 45   48 - 53   65 - 70   158 - 175   179 - 238
2 115 0.52   2 - 4   15 - 18   39 - 43   46 - 47   54 - 64   71 - 157   176 - 178

Sequence


           ____4________14__18__________________38___43________53_________64____70_________________________________________________ 
 1j4g(C) : MDVSFRLSGATSSSYGVFISNLRKALPNERKLYDIPLLRSSLPGSQRYALIHLTNYADETISVAIDVTNVYIMGYRAGDTSYFFNEASATEAAKYVFKDAMRKVTLPYSGNYERLQTAAG 
         :                                                                                                                          
 1j4g(D) : MDVSFRLSGATSSSYGVFISNLRKALPNERKLYDIPLLRSSLPGSQRYALIHLTNYADETISVAIDVTNVYIMGYRAGDTSYFFNEASATEAAKYVFKDAMRKVTLPYSGNYERLQTAAG 
           ____4________14__18__________________38___43________53_________64____70_________________________________________________ 

           ___________________________________157_______________175________________________________________________________________ 
 1j4g(C) : KIRENIPLGLPALDSAITTLFYYNANSAASALMVLIQSTSEAARYKFIEQQIGKRVDKTFLPSLAIISLENSWSALSKQIQIASTNNGQFESPVVLINAQNQRVTITNVDAGVVTSNIAL 
         :                                                                                                                          
 1j4g(D) : KIRENIPLGLPALDSAITTLFYYNANSAASALMVLIQSTSEAARYKFIEQQIGKRVDKTFLPSLAIISLENSWSALSKQIQIASTNNGQFESPVVLINAQNQRVTITNVDAGVVTSNIAL 
           ___________________________________157_______________175________________________________________________________________ 

           _                                                                                                                        
 1j4g(C) : L                                                                                                                        
         :                                                                                                                          
 1j4g(D) : L                                                                                                                        
           _                                                                                                                        

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		5.9
Translation
(A) 		0.1
Closure
(%) 		75.5
Bending Residues
( green ) 		  4 - 5
  14 - 15
  18 - 19
  38 - 40
  43 - 48
  53 - 54
  64 - 68
  70 - 71
  157 - 158
  175 - 176
  178 - 179
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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