Triose Phosphate Isomerase (E.C.5.3.1.1)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Triose Phosphate Isomerase (E.C.5.3.1.1)
  Conformer 1
(PDB)
1tim (B)
  Conformer 2
(PDB)
1ssg (A)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 213 0.91   9 - 162   183 - 241
2 20 1.74   163 - 182

Sequence


           ________________________________________________________________________________________________________________________ 
 1tim(B) : APRKFFVGGNWKMNGKRKSLGELIHTLDGAKLSADTEVVCGAPSIYLDFARQKLDAKIGVAAQNCYKVPKGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHALAEGL 
         :                                                                                                                          
 1ssg(A) : APRKFFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSIYLDFARQKLDAKIGVAAQNCYKVPKGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHALAEGL 
           ________________________________________________________________________________________________________________________ 

           _____________________________________161__________________182___________________________________________________________ 
 1tim(B) : GVIACIGEKLDEREAGITEKVVFQETKAIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKTHVSDAVAVQSRIIYGGSVTGGNCKELASQHDVDGFLVGGASLKPEFV 
         :                                                                                                                          
 1ssg(A) : GVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGYSLTPQQAQEVHEKLRGWLKSHVSDAVAQSTRIIYGGSVTGGNCKELASQHDVDGFLVGGASLKPEFV 
           _____________________________________161__________________182___________________________________________________________ 

           _______                                                                                                                  
 1tim(B) : DIINAKH                                                                                                                  
         :                                                                                                                          
 1ssg(A) : DIINAKH                                                                                                                  
           _______                                                                                                                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
21.0
Translation
(A)
-0.1
Closure
(%)
61.2
Bending Residues
( green )
  161 - 163
  182 - 184
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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