Trna Pseudouridine Synthase B

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Trna Pseudouridine Synthase B
  Conformer 1
(PDB) 		1ze1 (C)
  Conformer 2
(PDB) 		1r3e (A)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 271 2.1   7 - 119   141 - 302
2 21 5.3   120 - 140

Sequence


           ____________________________________________________________________________________________________________111_________ 
 1ze1(C) : MKHGILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFYKDLKKVYWVKMRLGLITETFDITGEVVEERECNVTEEEIREAIFSFVGEYDQVPPAYSAK 
         :                                                                                                                          
 1r3e(A) : MKHGILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFYKDLKKVYWVKMRLGLITETFDITGEVVEERECNVTEEEIREAIFSFVGEYDQVPPAYSAK 
           ____________________________________________________________________________________________________________120_________ 

           _________________140____________________________________________________________________________________________________ 
 1ze1(C) : KYKGERLYKLAREGKIINLPPKRVKIFKIWDVNIEGRDVSFRVEVSPGTYIRSLCMDIGYKLGCGATAVELVRESVGPHTIEESLNVFEAAPEEIENRIIPLEKCLEWLPRVVVHQESTK 
         :                                                                                                                          
 1r3e(A) : KYKGERLYKLAREGKIINLPPKRVKIFKIWDVNIEGRDVSFRVEVSPGTYIRSLCMDIGYKLGCGATAVELVRESVGPHTIEESLNVFEAAPEEIENRIIPLEKCLEWLPRVVVHQESTK 
           _________________149____________________________________________________________________________________________________ 

           _____________________________________________________________________                                                    
 1ze1(C) : MILNGSQIHLEMLKEWDGFKKGEVVRVFNEEGRLLALAEAERNSSFLETLRKHERQRRVLTLRKVFQT*                                                    
         :                                                                                                                          
 1r3e(A) : MILNGSQIHLEMLKEWDGFKKGEVVRVFNEEGRLLALAEAERNSSFLETLRKe----RVLTLRKVFNTR                                                    
           _____________________________________________________________________                                                    

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		145.0
Translation
(A) 		-1.5
Closure
(%) 		32.7
Bending Residues
( green ) 		  111 - 121
  140 - 141
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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