Trna Pseudouridine Synthase D

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Trna Pseudouridine Synthase D
  Conformer 1
(PDB) 		1si7 (A)
  Conformer 2
(PDB) 		1szw (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 233 0.38   4 - 31   85 - 85   126 - 338
2 92 1.0   32 - 84   86 - 125

Sequence


           ____________________________30_______________________________________________79_________________________________________ 
 1si7(A) : MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRK 
         :                                                                                                                          
 1szw(A) : *IEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKE-pDLSAFQLEGCQVLEYARHKRK 
           ____________________________30_______________________________________________79_________________________________________ 

           __125___________________________________________________________________________________________________________________ 
 1si7(A) : LRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEE 
         :                                                                                                                          
 1szw(A) : LRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQ-------rNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEE 
           __125___________________________________________________________________________________________________________________ 

           _____________________________________________________________________________________________________                    
 1si7(A) : LAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINT*                    
         :                                                                                                                          
 1szw(A) : LAELQRRVNDKEL-iTAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRA-lLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTT                    
           _____________________________________________________________________________________________________                    

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		18.8
Translation
(A) 		-0.6
Closure
(%) 		95.1
Bending Residues
( green ) 		  30 - 32
  79 - 86
  125 - 131
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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