Troponin C

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Troponin C
  Conformer 1
(PDB)
1j1d (A)
  Conformer 2
(PDB)
1j1d (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 81 0.81   4 - 84
2 66 0.53   94 - 159

Sequence


           __________________________________________________________________________________84____________________________________ 
 1j1d(A) : MDDIYKAAVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSk--SEEELSDLFRMFDKNADGYIDLEELKIM 
         :                                                                                                                          
 1j1d(D) : *DDIYKAAVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIM 
           __________________________________________________________________________________84____________________________________ 

           _________________________________________                                                                                
 1j1d(A) : LQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKGVE                                                                                
         :                                                                                                                          
 1j1d(D) : LQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKGVE                                                                                
           _________________________________________                                                                                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
22.9
Translation
(A)
0.8
Closure
(%)
95.1
Bending Residues
( green )
  84 - 94
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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