Tryptophanase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Tryptophanase
  Conformer 1
(PDB) 		2oqx (A)
  Conformer 2
(PDB) 		2c44 (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 304 1.88   7 - 17   54 - 339   356 - 359   422 - 427
2 155 0.88   18 - 53   340 - 355   360 - 421   428 - 469

Sequence


           ____________17__________________________________53______________________________________________________________________ 
 2oqx(A) : *KHLPEPFRIRVIEPVKRTTRAYREEAIIKSGMNPFLLDSEDVFIDLLTDSGTGAVTQSMQAAMMRGDEAYSGSRSYYALAESVKNIFGYQYTIPTH--rGAEQIYIPVLIKKREQEKGL 
         :                                                                                                                          
 2c44(C) : FKHLPEPFRIRVIEPVKRTTRAYREEAIIKSGMNPFLLDSEDVFIDLLTDSGTGAVTQSMQAAMMRGDEAYSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGL 
           ____________17__________________________________53______________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2oqx(A) : DRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREA 
         :                                                                                                                          
 2c44(C) : DRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREA 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________________________________339_________351_____359____ 
 2oqx(A) : EYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTL-vVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVV-qQAGGHAAFVD 
         :                                                                                                                          
 2c44(C) : EYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQQAGGHAAFVD 
           _____________________________________________________________________________________________339_________351_____359____ 

           _______________________________________________________421___427____________________________________________             
 2oqx(A) : AGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAANIKGLTFTYEPKVLRHFTAKLKEV             
         :                                                                                                                          
 2c44(C) : AGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENASNIKGLTFTYEPKVLRHFTAKLKEV             
           _______________________________________________________421___427____________________________________________             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		21.2
Translation
(A) 		0.1
Closure
(%) 		81.0
Bending Residues
( green ) 		  17 - 19
  53 - 54
  339 - 340
  351 - 357
  359 - 360
  421 - 422
  427 - 428
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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