Tryptophanyl-Trna Synthetase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Tryptophanyl-Trna Synthetase
  Conformer 1
(PDB)
1o5t (A)
  Conformer 2
(PDB)
2dr2 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 203 0.91   112 - 116   145 - 169   172 - 182   190 - 227   229 - 306   319 - 333   360 - 366   441 - 443   447 - 467
2 166 0.74   99 - 111   117 - 144   170 - 171   183 - 189   228 - 228   307 - 318   334 - 359   367 - 440   444 - 446

Sequence


           _______________111__116_________________________144______________________169__________182____189________________________ 
 1o5t(A) : SAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYS 
         :                                                                                                                          
 2dr2(A) : ***GIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYS 
           _______________111__116_________________________144______________________169__________182____189________________________ 

           ___________227____________________________________________________________________________306___312__________________333 
 1o5t(A) : YAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPA 
         :                                                                                                                          
 2dr2(A) : YAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPA 
           ___________227____________________________________________________________________________306___312__________________333 

           _______________________359____366_______________________________________________________________________440___446_______ 
 1o5t(A) : LLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVT 
         :                                                                                                                          
 2dr2(A) : LLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVT 
           _______________________359____366_______________________________________________________________________440___446_______ 

           __________________                                                                                                       
 1o5t(A) : DEIVKEFMTPRKLSFDFQ                                                                                                       
         :                                                                                                                          
 2dr2(A) : DEIVKEFMTPRKLSFD**                                                                                                       
           __________________                                                                                                       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.5
Translation
(A)
-0.4
Closure
(%)
83.6
Bending Residues
( green )
  111 - 112
  116 - 117
  144 - 146
  169 - 172
  182 - 183
  189 - 190
  227 - 229
  306 - 307
  312 - 319
  333 - 334
  359 - 360
  366 - 367
  440 - 441
  443 - 444
  446 - 447
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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