Tryptic Core Fragment Of The Lactose Repressor Of 3 Escherichia Coli 4

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Tryptic Core Fragment Of The Lactose Repressor Of 3 Escherichia Coli 4
  Conformer 1
(PDB) 		1tlf (C)
  Conformer 2
(PDB) 		1efa (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 151 0.68   72 - 81   162 - 292   319 - 328
2 115 0.8   63 - 71   82 - 161   293 - 318

Sequence


           ________________________71________81_____________________________________________________________________________161____ 
 1tlf(C) : ***************SLLIGVATSSLALHAPSQIVAAIKSRADQLGASVVVSMVERSGVEACKAAVHNLLAQRVSGLIINYPLDDQDAIAVEAACTNVPALFLDVSDQTPINSIIFSHED 
         :                                                                                                                          
 1efa(C) : NYIPNRVAQQLAGKQSLLIGVATSSLALHAPSQIVAAIKSRADQLGASVVVSMVERSGVEACKTAVHNLLAQRVSGLIINYPLDDQDAIAVEAACTNVPALFLDVSDQTPINSIIFSHED 
           ________________________71________81_____________________________________________________________________________161____ 

           ________________________________________________________________________________________________________________________ 
 1tlf(C) : GTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAEREGDWSAMSGFQQTMQMLNEGIVPTAMLVANDQMALGAMRAITESGLRVGADISVVGYDDTEDSSCYIPP 
         :                                                                                                                          
 1efa(C) : GTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAEREGDWSAMSGFQQTMQMLNEGIVPTAMLVANDQMALGAMRAITESGLRVGADISVVGYDDTEDSSCYIPP 
           ________________________________________________________________________________________________________________________ 

           ____292_______________________318______________________________________                                                  
 1tlf(C) : LTTIKQDFRLLGQTSVDRLLQLSQGQAVKGNQLLPVSLVKRKTTLAPNTQTASPRALADSLMQLARQVSRL                                                  
         :                                                                                                                          
 1efa(C) : LTTIKQDFRLLGQTSVDRLLQLSQGQAVKGNQLLPVSLVKRKTTLA*************************                                                  
           ____292_______________________318______________________________________                                                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		8.0
Translation
(A) 		0.7
Closure
(%) 		99.9
Bending Residues
( green ) 		  71 - 75
  81 - 82
  161 - 162
  292 - 293
  318 - 319
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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