Tumor Necrosis Factor Receptor Superfamily Member 4

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Tumor Necrosis Factor Receptor Superfamily Member 4
  Conformer 1
(PDB)
2hey (T)
  Conformer 2
(PDB)
2hev (R)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 91 0.9   31 - 117   123 - 125   135 - 135
2 40 1.12   118 - 122   126 - 134   136 - 164

Sequence


           ____________________________________________________________________________________115____122_________134______________ 
 2hey(T) : LHCVGDTYPSNDRCCHECRPGNGMVSRCSRSQNTVCRPCGPGFYNDVVSSKPCKPCTWCNLRSGSERKQLCTATQDTVCRCRAGTQPLDSYKPGVDCAPCPPGHFSPGDNQACKPWTNCT 
         :                                                                                                                          
 2hev(R) : LHCVGDTYPSNDRCCHECRPGNGMVSRCSRSQNTVCRPCGPGFYNDVVSSKPCKPCTWCNLRSGSERKQLCTATQDTVCRCRAGTQPLDSYKPGVDCAPCPPGHFSPGDNQACKPWTNCT 
           ____________________________________________________________________________________115____122_________134______________ 

           ____________________                                                                                                     
 2hey(T) : LA---tLQPASNSSDAIC**                                                                                                     
         :                                                                                                                          
 2hev(R) : LAGKHTLQPASNSSDAICED                                                                                                     
           ____________________                                                                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
18.2
Translation
(A)
-0.1
Closure
(%)
17.2
Bending Residues
( green )
  115 - 120
  122 - 123
  125 - 126
  134 - 136
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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