Type II Secretion Atpase Xpse

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Type II Secretion Atpase Xpse
  Conformer 1
(PDB) 		2d27 (A)
  Conformer 2
(PDB) 		2d28 (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 106 0.71   38 - 146
2 30 1.86   4 - 36

Sequence


           _________________________28_____________________________________________________________________________________________ 
 2d27(A) : EQRSAETRIVEALLERRRLKDTDLLRARQLQAESGgLLALLGRLGLVSERDHAETCAEVLGLPLVDARQLGDTPPElPEVQGLSLRFLKQFHLCPVGERDGRLDLWIADPYDDYAIDAVR 
         :                                                                                                                          
 2d28(C) : EQRSAETRIVEALLERRRLKDTDLVRARQ---eSGgLLALLGRLGLVSERDHAETCAEVLGLPLVDARQLGDTPPE--eVQGLSLRFLKQFHLCPVGERDGRLDLWIADPYDDYAIDAVR 
           _________________________28_____________________________________________________________________________________________ 

           __________________________                                                                                               
 2d27(A) : LATGLPLLLHVGLRSEIDDLIERWY*                                                                                               
         :                                                                                                                          
 2d28(C) : LATGLPLLLHVGLRSEIDDLIERWYG                                                                                               
           __________________________                                                                                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		178.5
Translation
(A) 		-1.5
Closure
(%) 		95.7
Bending Residues
( green ) 		  28 - 39
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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