Tyrosyl-Trna Synthetase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Tyrosyl-Trna Synthetase
  Conformer 1
(PDB) 		1h3f (B)
  Conformer 2
(PDB) 		1h3f (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 319 1.36   7 - 355
2 75 0.35   356 - 430

Sequence


           ________________________________________________________________________________________________________________________ 
 1h3f(B) : GHTPEEALALLKRGAEEIVPEEELLAKLKEGRPLTVKLGADPTRPDLHLGHAVVLRKMRQFQELGHKVVLIIGDFTGMItLEETRENAKTYVAQAGKILRQEPHLFELRYNSEWLEGLTF 
         :                                                                                                                          
 1h3f(A) : GHTPEEALALLKRGAEEIVPEEELLAKLKEGRPLTVKLGADPTRPDLHLGHAVVLRKMRQFQELGHKVVLIIGDFt--------RENAKTYVAQAGKILRQEPHLFELRYNSEWLEGLTF 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1h3f(B) : KEVVRLTSLMTVAQMLEREDFKKRYEAGIPISLHELLYPFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMSKSLDNYIGLTEPPEAMFKKLMRV 
         :                                                                                                                          
 1h3f(A) : KEVVRLTSLMTVAQMLEREDFKKRYEAGIPISLHELLYPFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMSKSLDNYIGLTEPPEAMFKKLMRV 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________________________________353_________________________________ 
 1h3f(B) : PDPLLPSYFRLLTDLEEEEIEALLKAGPVPAHRVLARLLTAAYALPQIPPRIDRAFYESLGYAWEAFGRDKEAGPEEVRRAEARYDe-----IPEVTIPASELKEGRIWVARLFTLAGLT 
         :                                                                                                                          
 1h3f(A) : PDPLLPSYFRLLTDLEEEEIEALLKAGPVPAHRVLARLLTAAYALPQIPPRIDRAFYESLGYAWEAFGRDKEAGPEEVRRAEARYDEVAKeEIPEVTIPASELKEGRIWVARLFTLAGLT 
           ____________________________________________________________________________________344_________________________________ 

           ___________________________________________________                                                                      
 1h3f(B) : PSNAEARRLIQNRGLRLDGEVLTDPMLQVDLSRPRILQRGKDRFVRVRLSD                                                                      
         :                                                                                                                          
 1h3f(A) : PSNAEARRLIQNRGLRLDGEVLTDPMLQVDLSRPRILQRGKDRFVRVRLSD                                                                      
           ___________________________________________________                                                                      

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		96.2
Translation
(A) 		1.7
Closure
(%) 		38.4
Bending Residues
( green ) 		  353 - 356
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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