Tyrosyl-Trna Synthetase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Tyrosyl-Trna Synthetase
  Conformer 1
(PDB) 		1n3l (A)
  Conformer 2
(PDB) 		1q11 (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 290 0.85   7 - 73   95 - 327
2 33 1.93   74 - 94   328 - 339

Sequence


           ____________________________________________________________________73___________________94_____________________________ 
 1n3l(A) : APSPEEKLHLITRNLQEVLGEEKLKEILKERELKIYWGTATTGKPHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLEKLKFIKGTDY 
         :                                                                                                                          
 1q11(A) : APSPEEKLHLITRNLQEVLGEEKLKEILKERELKIYWGTATTGKPHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLEKLKFIKGTDY 
           ____________________________________________________________________73___________________94_____________________________ 

           ________________________________________________________________________________________________________________________ 
 1n3l(A) : QLSKEYTLDVYRLSSVVTQHDSKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLTGSeSKIDLLDRKEDVKKKLKKAFC 
         :                                                                                                                          
 1q11(A) : QLSKEYTLDVYRLSSVVTQHDSKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLTG---kIDLLDRKEDVKKKLKKAFC 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________________________327_______________                             
 1n3l(A) : EPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDLEKDFAAEVVHPGDLKNSVEVALNKLLDPIREKFNTPALKKLASAAYP                             
         :                                                                                                                          
 1q11(A) : EPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDLEKDFAAEVVHPGDLKNSVEVALNKLLDPIREKFNTPALKKLASAAYP                             
           __________________________________________________________________________327_______________                             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		19.4
Translation
(A) 		-0.4
Closure
(%) 		99.9
Bending Residues
( green ) 		  73 - 74
  94 - 96
  327 - 328
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download