Ubiquinol Cytochrome C Oxidoreductase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ubiquinol Cytochrome C Oxidoreductase
  Conformer 1
(PDB) 		1bcc (C)
  Conformer 2
(PDB) 		3bcc (C)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 305 0.6   8 - 133   176 - 246   267 - 374
2 54 0.61   134 - 175   255 - 266

Sequence


           ________________________________________________________________________________________________________________________ 
 1bcc(C) : APNIRKSHPLLKMINNSLIDLPAPSNISAWWNFGSLLAVCLMTQILTGLLLAMHYTADTSLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIFLHIGRGLYYGSYLYKETWNTGVILL 
         :                                                                                                                          
 3bcc(C) : APNIRKSHPLLKMINNSLIDLPAPSNISAWWNFGSLLAVCLMTQILTGLLLAMHYTADTSLAFSSVAHTCRNVQYGWLIRNLHANGASFFFICIFLHIGRGLYYGSYLYKETWNTGVILL 
           ________________________________________________________________________________________________________________________ 

           _________133_______________________________________175__________________________________________________________________ 
 1bcc(C) : LTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGITIIHLTFLHESGSNNPLGISSDSDKIPFHPYYSFKDILGLTLMLTPFL 
         :                                                                                                                          
 3bcc(C) : LTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGITIIHLTFLHESGSNNPLGISSDSDKIPFHPYYSFKDILGLTLMLTPFL 
           _________133_______________________________________175__________________________________________________________________ 

           __246_____________262___________________________________________________________________________________________________ 
 1bcc(C) : TLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQTLFWLLVANLLILTWIGSQPVEHPFIIIGQMASLSYFT 
         :                                                                                                                          
 3bcc(C) : TLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQTLFWLLVANLLILTWIGSQPVEHPFIIIGQMASLSYFT 
           __246_____________262___________________________________________________________________________________________________ 

           ___________________                                                                                                      
 1bcc(C) : ILLILFPTIGTLENKMLNY                                                                                                      
         :                                                                                                                          
 3bcc(C) : ILLILFPTIGTLENKMLNY                                                                                                      
           ___________________                                                                                                      

Morph
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		4.1
Translation
(A) 		0.0
Closure
(%) 		41.0
Bending Residues
( green ) 		  133 - 134
  175 - 176
  246 - 255
  262 - 270
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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