Udp-N-Acetylglucosamine 2-Epimerase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Udp-N-Acetylglucosamine 2-Epimerase
  Conformer 1
(PDB) 		1vgv (D)
  Conformer 2
(PDB) 		1vgv (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 189 0.95   4 - 182   356 - 372
2 168 1.02   183 - 355

Sequence


           ________________________________________________________________________________________________________________________ 
 1vgv(D) : KVLTVFGTRPEAIKaPLVHALAKDPFFEAKVCVTAQHRElDQVLKLFSIVPDYDLNIqPGQGLTEITCRILEGLKPILAEFKPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAGLRTGD 
         :                                                                                                                          
 1vgv(B) : KVLTVFGTRPEAIKaPLVHALAKDPFFEAKVCVTAQHRElDQVLKLFSIVPDYDLNIq---GLTEITCRILEGLKPILAEFKPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAGLRTGD 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________180_________________________________________________________________ 
 1vgv(D) : LYSPWPEEANRTLTGHLAyHFSPTETSRQNLLRENVADSRIFITGNTVIDALLWVRDQVsSDKLRSELAANYPFIDPDKKiLVTGHRRESFGRGFEEICHALADIATTHQDIQIVYPVHL 
         :                                                                                                                          
 1vgv(B) : LYSPWPEEANRTLTGHLAyHFSPTETSRQNLLRENVADSRIFITGNTVIDALLWVRDQVsSDKLRSELAANYPFIDPDKKiLVTGHRRESFGRGFEEICHALADIATTHQDIQIVYPVHL 
           ____________________________________________________180_________________________________________________________________ 

           ______________________________________________________________________________________________________355_______________ 
 1vgv(D) : NPNVREPVNRILGHVKNVILIDPQEYLPFVWLnHAWLILTDSGGIQEEAPSLGKPVLVrDTTERPEAVTAGTVRLVGTDKQRIVEEVTRLLKDENEYQAsRAHNPYGDGQACSRILEALK 
         :                                                                                                                          
 1vgv(B) : NPNVREPVNRILGHVKNVILIDPQEYLPFVWLnHAWLILTDSGGIQEEAPSLGKPVLVrDTTERPEAVTAGTVRLVGTDKQRIVEEVTRLLKDENEYQAsRAHNPYGDGQACSRILEALK 
           ______________________________________________________________________________________________________355_______________ 

           ______                                                                                                                   
 1vgv(D) : NNRI**                                                                                                                   
         :                                                                                                                          
 1vgv(B) : NNRISL                                                                                                                   
           ______                                                                                                                   

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		17.9
Translation
(A) 		0.0
Closure
(%) 		96.1
Bending Residues
( green ) 		  180 - 188
  355 - 356
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download