Udp-N-Acetylmuramate-L-Alanine Ligase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Udp-N-Acetylmuramate-L-Alanine Ligase
  Conformer 1
(PDB) 		1p3d (A)
  Conformer 2
(PDB) 		1gqq (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 317 1.02   116 - 471
2 92 0.63   21 - 114

Sequence


           _______________________________________________________________________________________________109______________________ 
 1p3d(A) : IIPErRVQQIHFIGIGGAG-sGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVSSAIKDDNPELVTSKQKRIPVIQRAQ-lAEI-rFRHGIAVAGTHGKTT 
         :                                                                                                                          
 1gqq(B) : *******QQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVSSAIKDDNPELVTSKQKRIPVIQRAQMLAEIMRFRHGIAVAGTHGKTT 
           _______________________________________________________________________________________________109______________________ 

           ________________________________________________________________________________________________________________________ 
 1p3d(A) : TTAi--SiYTQAKLDPTFVNGGLVKSAGKNAHLGASRYLIAEADESDASFLHLQP-vSVVTN-ePDHdTYEGDFEK-kATYVKFLHNLPFYGLAV-cADDPVL-eLVPKVGRQVITYGFS 
         :                                                                                                                          
 1gqq(B) : TTAMISMIYTQAKLDPTFV-----------------rYLIAEADE----fLHLQPMVSVVTNMEP--------fEKMKATYVKFLHNLPFYGLAVMCADDPVLMELVPKVGRQVITYGFS 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1p3d(A) : EQADYRIEDYEQTGFQGHYTVICPNNERINVLLNVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDDYGHHPTEVGVTIKAAREGWGDKRIV-i 
         :                                                                                                                          
 1gqq(B) : EQADYRIEDYEQTGFQGHYTVICPNNERINVLLNVPGKHNALNATAALAVAKEEGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDDYGHHPTEVGVTIKAAREGWGDKRIVMI 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________________________________________________                  
 1p3d(A) : FQPHRYSRTRDLFDDFVQVLSQVDALI-lDVYAAGEAPIVGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLILAQGAGSVSKISRGLAESW**                  
         :                                                                                                                          
 1gqq(B) : FQPHRYSRTRDLFDDFVQVLSQVDALIMLDVYAAGEAPIVGADSKSLCRSIRNLGKVDPILVSDTSQLGDVLDQIIQDGDLILAQGAGSVSKISRGLAESWKN                  
           _______________________________________________________________________________________________________                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		23.7
Translation
(A) 		1.6
Closure
(%) 		68.7
Bending Residues
( green ) 		  109 - 120
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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