Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
  Conformer 1
(PDB) 		1e0d (A)
  Conformer 2
(PDB) 		4uag (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 283 0.84   3 - 300
2 135 0.47   301 - 435

Sequence


           ________________________________________________________________________________________________________________________ 
 1e0d(A) : ADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVASPGIALAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTT 
         :                                                                                                                          
 4uag(A) : ADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVASPGIALAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTT 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1e0d(A) : LVGEMAKAAGVNVGVGGNIGLPALMLLDDECELYVLELSSFQLETTSSLQAVAATILNVTED------fGLQQYRAAKLRIYENAKVCVVNADDALTMPIaDERCVSFGVNMGDYHLNHQ 
         :                                                                                                                          
 4uag(A) : LVGEMAKAAGVNVGVGGNIGLPALMLLDDECELYVLELSSFQLETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAA-lRIYENAKVCVVNADDALTMPI---rCVSFGVNMGDYHLNH- 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________299_______________________________________________________________ 
 1e0d(A) : QGETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGKSADFSPLARYLNGD 
         :                                                                                                                          
 4uag(A) : --eTWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGKSADFSPLARYLNGD 
           ______________________________________________________299_______________________________________________________________ 

           ___________________________________________________________________________                                              
 1e0d(A) : NVRLYCFGRDGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFKNFEQRGNEFARLAKELG                                              
         :                                                                                                                          
 4uag(A) : NVRLYCFGRDGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQFKNFEQRGNEFARLAKELG                                              
           ___________________________________________________________________________                                              

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		47.2
Translation
(A) 		-0.6
Closure
(%) 		100.0
Bending Residues
( green ) 		  299 - 301
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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