Udp-N-Acetylglucosamine-N-Acetylmuramyl- (Pentapeptide) Pyrophosphoryl-Undecaprenol N- Acetylglucosamine Transferase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Udp-N-Acetylglucosamine-N-Acetylmuramyl- (Pentapeptide) Pyrophosphoryl-Undecaprenol N- Acetylglucosamine Transferase
  Conformer 1
(PDB) 		1f0k (B)
  Conformer 2
(PDB) 		1nlm (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 178 0.72   162 - 339
2 168 1.22   9 - 161   340 - 354

Sequence


           ________________________________________________________________________________________________________________________ 
 1f0k(B) : KRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADRMEADLVPKHGIEIDFIRISGLRGKGIKALIAAPLRIFNAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAWSLGIPVVLHE 
         :                                                                                                                          
 1nlm(B) : KRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADRMEADLVPKHGIEIDFIRISGLRGKGIKALIAAPLRIFNAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAWSLGIPVVLHE 
           ________________________________________________________________________________________________________________________ 

           ________________________________161_____________________________________________________________________________________ 
 1f0k(B) : QNGIAGLTNKWLAKIATKVMQAFPGAFPNAEVVGNPVRTDVLALPLPQQRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLGDSVTIWHQSGKGSQQSVEQAYAEAGQPQHKVTEFID 
         :                                                                                                                          
 1nlm(B) : QNGIAGLTNKWLAKIATKVMQAFPGAFPNAEVVGNPVRTDVLALPLPQQRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLGDSVTIWHQSGKGSQQSVEQAYAEAGQPQHKVTEFID 
           ________________________________161_____________________________________________________________________________________ 

           __________________________________________________________________________________________339__________________          
 1f0k(B) : DMAAAYAWADVVVCRSGALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAGAAKIIEQPQLSVDAVANTLAGWSRETLLTMAERARAASIPDATERVANEVSRVARAL          
         :                                                                                                                          
 1nlm(B) : DMAAAYAWADVVVCRSGALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAGAAKIIEQPQLSVDAVANTLAGWSRETLLTMAERARAASIPDATERVANEVSRVARA*          
           __________________________________________________________________________________________339__________________          

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		10.9
Translation
(A) 		-0.1
Closure
(%) 		7.0
Bending Residues
( green ) 		  161 - 162
  339 - 340
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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