Uracil-Dna Glycosylase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Uracil-Dna Glycosylase
  Conformer 1
(PDB) 		1flz (A)
  Conformer 2
(PDB) 		1eui (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 111 0.91   10 - 78   80 - 82   85 - 86   117 - 153
2 102 1.21   79 - 79   83 - 84   87 - 116   154 - 222

Sequence


           ___________________________________________________________________________78__82_______________________________116_____ 
 1flz(A) : ANELTWHDVLAEEKQQPHFLNTLQTVASERQSGVTIYPPQKDVFNAFRFTELGDVKVVILGQDPYHGPGQAHGLAFSVRPGIAIPPSLLNMYKELENTIPGFTRPNHGYLESWARQGVLL 
         :                                                                                                                          
 1eui(A) : ****TWHDVLAEEKQQPYFLNTLQTVASERQSGVTIYPPQKDVFNAFRFTELGDVKVVILGQDPYHGPGQAHGLAFSVRPGIAIPPSLLNMYKELENTIPGFTRPNHGYLESWARQGVLL 
           ___________________________________________________________________________78__82_______________________________116_____ 

           _____________________________153____________________________________________________________________________             
 1flz(A) : LNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVVFLLWGSHAQKKGAIIDKQRHHVLKAPHPSPLSAHRGFFGCNHFVLANQWLEQHGETPIDWMPVLPAESE             
         :                                                                                                                          
 1eui(A) : LNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVVFLLWGSHAQKKGAIIDKQRHHVLKAPHPSPLSAHRGFFGCNHFVLANQWLEQRGETPIDWMPVLPA***             
           _____________________________153____________________________________________________________________________             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		11.8
Translation
(A) 		-0.1
Closure
(%) 		99.3
Bending Residues
( green ) 		  78 - 80
  82 - 87
  116 - 117
  153 - 154
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download