Uridine Diphospho-N-Acetylenolpyruvylglucosamine Reductase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Uridine Diphospho-N-Acetylenolpyruvylglucosamine Reductase
  Conformer 1
(PDB) 		1mbt  
  Conformer 2
(PDB) 		1uxy  
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 219 0.63   5 - 50   52 - 54   58 - 217   277 - 277   284 - 285   325 - 325   328 - 328   330 - 334
2 117 0.83   51 - 51   55 - 57   218 - 276   278 - 283   286 - 324   326 - 327   329 - 329   335 - 340

Sequence


           ______________________________________________50__54_57_________________________________________________________________ 
 1mbt    : HSLKPWNTFGIDHNAQHIVCAEDEQQLLNAWQYATAEGQPVLILGEGSNVLFLEDYRGTVIINRIKGIEIHDEPDAWYLHVGAGENWHRLVKYTLQEGMPGLENLALIPGCVGSSPIQNI 
         :                                                                                                                          
 1uxy    : HSLKPWNTFGIDHNAQHIVCAEDEQQLLNAWQYATAEGQPVLILGEGSNVLFLEDYRGTVIINRIKGIEIHDEPDAWYLHVGAGENWHRLVKYTLQEGMPGLENLALIPGCVGSSPIQNI 
           ______________________________________________50__54_57_________________________________________________________________ 

           __________________________________________________________________________________________215___________________________ 
 1mbt    : GAYGVELQRVCAYVDSVELATGKQVRLTAKECRFGYRDSIFKHEYQDRFAIVAVGLRLPKEWQPVLTYGDLTRLDPTTVTPQQVFNAVCHMRTTKLPDPKVNGNAGSFFKNPVVSAETAK 
         :                                                                                                                          
 1uxy    : GAYGVELQRVCAYVDSVELATGKQVRLTAKECRFGYRDSIFKHEYQDRFAIVAVGLRLPKEWQPVLTYGDLTRLDPTTVTPQQVFNAVCHMRTTKLPDPKVNGNAGAFFKNPVVSAETAK 
           __________________________________________________________________________________________215___________________________ 

           _______________________________276____283______________________________________324_______334________                     
 1mbt    : ALLSQFPTAPNYPQADGSVKLAAGWLIDQCQLKGMQIGGAAVHRQQALVLINEDNAKSEDVVQLAHHVRQKVGEKFNVWLEPEVRFIGASGEVSAVETIS                     
         :                                                                                                                          
 1uxy    : ALLSQFPTAPNYPQADGSVKLAAGWLIDQCQLKGMQIGGAAVHRQQALVLINEDNAKSEDVVQLAHHVRQKVGEKFNVWLEPEVRFIGASGEVSAVETIS                     
           _______________________________276____283______________________________________324_______334________                     

Morph
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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		8.3
Translation
(A) 		-0.6
Closure
(%) 		79.0
Bending Residues
( green ) 		  50 - 52
  54 - 55
  57 - 58
  215 - 218
  276 - 278
  283 - 286
  324 - 330
  334 - 335
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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