Uroporphyrinogen-III Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Uroporphyrinogen-III Synthase
  Conformer 1
(PDB)
1jr2 (A)
  Conformer 2
(PDB)
1jr2 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 132 0.34   39 - 170
2 124 1.26   3 - 38   171 - 258

Sequence


           ____________________________________38__________________________________________________________________________________ 
 1jr2(A) : MKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFTSPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVSKIGLDTEGETCG 
         :                                                                                                                          
 1jr2(B) : MKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFTSPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVSKIGLDTEGETCG 
           ____________________________________38__________________________________________________________________________________ 

           ______________________________________________169_______________________________________________________________________ 
 1jr2(A) : NAEKLAEYICSRESSALPLLFPCGNLKREILPKALKDKGIAMESITVYQTVAHPGIQGNLNSYYSQQGVPASITFFSPSGLTYSLKHIQELSGDNIDQIKFAAIGPTTARALAAQGLPVS 
         :                                                                                                                          
 1jr2(B) : NAEKLAEYICSRESSALPLLFPCGNLKREILPKALKDKGIAMESITVYQTVAHPGIQGNLNSYYSQQGVPASITFFSPSGLTYSLKHIQELSGDNIDQIKFAAIGPTTARALAAQGLPVS 
           ______________________________________________169_______________________________________________________________________ 

           ____________________                                                                                                     
 1jr2(A) : CTAESPTPQALATGIRKALQ                                                                                                     
         :                                                                                                                          
 1jr2(B) : CTAESPTPQALATGIRKALQ                                                                                                     
           ____________________                                                                                                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
15.1
Translation
(A)
0.9
Closure
(%)
86.3
Bending Residues
( green )
  38 - 40
  169 - 171
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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