Uroporphyrinogen III Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Uroporphyrinogen III Synthase
  Conformer 1
(PDB)
1wcw (A)
  Conformer 2
(PDB)
1wd7 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 129 0.74   10 - 41   163 - 259
2 121 1.66   42 - 162

Sequence


           ______________________________38________________________________________________________________________________________ 
 1wcw(A) : *AVRVAYAGLRRKEAFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRALAQGVDLFLATTGVGVRDLLEAGKALGLDLEGPLAKAFRLARGAKAARALKEAGLPPHAVGDGTSKSLLPL 
         :                                                                                                                          
 1wd7(B) : DAVRVAYAGLRRKEAFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRALAQGVDLFLATTGVGVRDLLEAGKALGLDLEGPLAKAFRLARGAKAARALKEAGLPPHAVGDGTSKSLLPL 
           ______________________________38________________________________________________________________________________________ 

           ________________________________161_____________________________________________________________________________________ 
 1wcw(A) : LPQGRGVAALQLYGKPLPLLENALAERGYRVLPLMPYRHLPDPEGILRLEEALLRGEVDALAFVAAIQVEFLFEGAKDPKALREALNTRVKALAVGRVTADALREWGVKPFYVDETERLG 
         :                                                                                                                          
 1wd7(B) : LPQGRGVAALQLYGKPLPLLENALAERGYRVLPLMPYRHLPDPEGILRLEEALLRGEVDALAFVAAIQVEFLFEGAKDPKALREALNTRVKALAVGRVTADALREWGVKPFYVDETERLG 
           ________________________________161_____________________________________________________________________________________ 

           _______________                                                                                                          
 1wcw(A) : SLLQGFKRALQKEVA                                                                                                          
         :                                                                                                                          
 1wd7(B) : SLLQGFKRALQKEVA                                                                                                          
           _______________                                                                                                          

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
39.5
Translation
(A)
2.5
Closure
(%)
15.9
Bending Residues
( green )
  38 - 50
  161 - 165
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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