Uvrabc System Protein C

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Uvrabc System Protein C
  Conformer 1
(PDB) 		2nrx (B)
  Conformer 2
(PDB) 		2nrv (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 153 1.81   344 - 504
2 47 0.49   505 - 552

Sequence


           ________________________________________________________________________________________________________________________ 
 2nrx(B) : **LRKEALEELMKLLNMKDFPYRIEGIDISHLQGKYTVASLVVFEDGFPKKGDYRRYKIEQDHPDDYESIRTVVKRRYSKHPLPNLLFVDGGIGQVNAAIEALKEIGKDCPVVGLA--eE 
         :                                                                                                                          
 2nrv(B) : RGLRKEALEELMKLLNMKDFPYRIEGIDISHLQGKYTVASLVVFEDGFPKKGDYRRYKIEQDHPDDYESIRTVVKRRYSKHPLPNLLFVDGGIGQVNAAIEALKEIGKDCPVVGLAKKEE 
           ________________________________________________________________________________________________________________________ 

           ________________________________494_______________________________________________________________                       
 2nrx(B) : TVVFENREIHLPHDHPVLRLLVQIRDETHRFAVSYHR------sLRSVLDNVPGIGPIRKKKLIEHFGSLENIRSASLEEIARVIGSTEIARRVLDIL                       
         :                                                                                                                          
 2nrv(B) : TVVFENREIHLPHDHPVLRLLVQIRDETHRFAVSYHRKRREKESLRSVLD-vPGIGPIRKKKLIEHFGSLENIRSASLEEIARVIGSTEIARRVL***                       
           ________________________________494_______________________________________________________________                       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		166.8
Translation
(A) 		-11.9
Closure
(%) 		46.8
Bending Residues
( green ) 		  494 - 507
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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