Vacuolar Protein Sorting Protein 29

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Vacuolar Protein Sorting Protein 29
  Conformer 1
(PDB) 		1w24 (A)
  Conformer 2
(PDB) 		1z2w (A)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 146 0.94   8 - 84   107 - 175
2 20 3.69   85 - 106

Sequence


           __________________________________________________________________________________84__________________105_______________ 
 1w24(A) : MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIP--dMASLALLQRQFDVDILISGHTHKFE 
         :                                                                                                                          
 1z2w(A) : MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFE 
           __________________________________________________________________________________84__________________105_______________ 

           ______________________________________________________________                                                           
 1w24(A) : AFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKP                                                           
         :                                                                                                                          
 1z2w(A) : AFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKS                                                           
           ______________________________________________________________                                                           

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		73.3
Translation
(A) 		0.2
Closure
(%) 		98.4
Bending Residues
( green ) 		  84 - 85
  105 - 111
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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