Virb11 Homolog

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Virb11 Homolog
  Conformer 1
(PDB)
1nlz (F)
  Conformer 2
(PDB)
1nlz (E)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 182 0.14   141 - 326
2 113 0.57   26 - 140

Sequence


           __________________________________________________________________________________________________________134___________ 
 1nlz(F) : ALNPLRHATEELFGDFLKeNITEICYNGNKVVWVLKNNGEWQPFDVRDRKAFSLSRLhFARCCASFKKKTIDNYENPILSSNLANGERVQIVLSPVTVNDETISISIRIPSKTTYPHSFF 
         :                                                                                                                          
 1nlz(E) : ALNPLRHATEELFGDFLKeNITEICYNGNKVVWVLKNNGEWQPFDVRDRKAFSLSRLhFARCCASFKKKTIDNYENPILSSNLANGERVQIVLSPVTVNDETISISIRIPSKTTYPHSFF 
           __________________________________________________________________________________________________________134___________ 

           ________________________________________________________________________________________________________________________ 
 1nlz(F) : EEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIeFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRrPDRIILGELRSSEAYDFYNVLCSGHKG 
         :                                                                                                                          
 1nlz(E) : EEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIeFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRrPDRIILGELRSSEAYDFYNVLCSGHKG 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________                                                              
 1nlz(F) : TLTTLHAGSSEEAFIRLANsSSNSAARNIKFESLIEGFKDLIDiVHINHHKQCDEFYIK                                                              
         :                                                                                                                          
 1nlz(E) : TLTTLHAGSSEEAFIRLANsSSNSAARNIKFESLIEGFKDLIDiVHINHHKQCDEFYIK                                                              
           ___________________________________________________________                                                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
20.0
Translation
(A)
1.6
Closure
(%)
81.1
Bending Residues
( green )
  134 - 143
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download