Windbeutel Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Windbeutel Protein
  Conformer 1
(PDB) 		2c1y (A)
  Conformer 2
(PDB) 		2c0e (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 119 0.64   26 - 144
2 105 0.7   145 - 249

Sequence


           ______________________________________________________________________________________________________________________14 
 2c1y(A) : TCTGCVDLDELSFEKTVERFPYSVVKFDIAYPKGEKHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTPL 
         :                                                                                                                          
 2c0e(A) : *CTGCVDLDELSFEKTVERFPYSVVKFDIAYPYGEKHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTPL 
           ______________________________________________________________________________________________________________________14 

           3______________________________________________________________________________________________________________          
 2c1y(A) : YIGRDGCIKEFNEVLKNYANIPDAEQLKLIEKLQAKQEQLTDPEQQQNARAYLIYMRKIHEVGYDFLEEETKRLLRLKAGKVTEAKKEELLRKLNILEVFRVHKVTKTAPE          
         :                                                                                                                          
 2c0e(A) : YIGRDGCIKEFNEVLKNYANIPDAEQLKLIEKLQAKQEQLTDPEQQQNARAYLIYMRKIHEVGYDFLEEETKRLLRLKAGKVTEAKKEELLRKLNILEVFRVHKVTKTA**          
           3______________________________________________________________________________________________________________          

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		66.3
Translation
(A) 		-0.3
Closure
(%) 		32.4
Bending Residues
( green ) 		  143 - 147
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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