Xylanase J

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Xylanase J
  Conformer 1
(PDB)
2dck (A)
  Conformer 2
(PDB)
2dcj (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 201 1.22   3 - 210
2 115 0.36   211 - 325

Sequence


           ________________________________________________________________________________________________________________________ 
 2dck(A) : AITSNEIGTHDGYDYEFWKDSGGSGSMTLNSGGTFSAQWSNVNNILFRKGKKFDETQTHQQIGNMSINYGATYNPNGNSYLTVYGWTVDPLVEFYIVDSWGTWRPPGGTPKGTINVDGGT 
         :                                                                                                                          
 2dcj(A) : AITSNEIGTHDGYDYEFWKDSGGSGSMTLNSGGTFSAQWSNVNNILFRKGKKFDETQTHQQIGNMSINYGATYNPNGNSYLTVYGWTVDPLVEFYIVDSWGTWRPPGGTPKGTINVDGGT 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________________200________________________________________ 
 2dck(A) : YQIYETTRYNQPSIKGTATFQQYWSVRTSKRTSGTISVSEHFRAWESLGMNMGNMYEVALTVEGYQSSGSANVYSNTLTIG-------aTRVEAESMTKGGPYTSNITSPFNGVALYANG 
         :                                                                                                                          
 2dcj(A) : YQIYETTRYNQPSIKGTATFQQYWSVRTSKRTSGTISVSEHFRAWESLGMNMGNMYEVALTVEGYQSSGSANVYSNTLTIGGQSGGEQATRVEAESMTKGGPYTSNITSPFNGVALYANG 
           _____________________________________________________________________________200________________________________________ 

           _______________________________________________________________________________________                                  
 2dck(A) : DNVSFNHSFTKANSSFSLRGASNNSNMARVDLRIGGQNRGTFYFGDQYPAVYTINNINHGIGNQLVELIVTADDGTWDAYLDYLEIR                                  
         :                                                                                                                          
 2dcj(A) : DNVSFNHSFTKANSSFSLRGASNNSNMARVDLRIGGQNRGTFYFGDQYPAVYTINNINHGIGNQLVELIVTADDGTWDAYLDYLEIR                                  
           _______________________________________________________________________________________                                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
167.7
Translation
(A)
-2.6
Closure
(%)
89.4
Bending Residues
( green )
  200 - 211
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download