Ychf Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ychf Protein
  Conformer 1
(PDB)
1jal (A)
  Conformer 2
(PDB)
1jal (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 216 1.42   5 - 41   69 - 275
2 115 0.64   3 - 4   42 - 68   276 - 361

Sequence


           __3_____________________41__________________________________68__________________________________________________________ 
 1jal(A) : MGFKCGIVGLPNVGKSTLFNALTKAGpFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFENiDPLDDIDTINTELALA 
         :                                                                                                                          
 1jal(B) : MGFKCGIVGLPNVGKSTLFNALTKA---------tGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE----lDDIDTINTELALA 
           __3_____________________41__________________________________68__________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1jal(A) : DLDSCERAIQRLQKRAKGGDKEAKFELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAIESEIAELDDEEKVEF 
         :                                                                                                                          
 1jal(B) : DLDSCERAIQRLQKRAKGGDKEAKFELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAIESEIAELDDEEKVEF 
           ________________________________________________________________________________________________________________________ 

           _________________275________________________________________________________________________________________             
 1jal(A) : LQDLGIEEPGLNRVIRAGYALLNLQTYFTAGVKEVRAWTVSVGATAPKAAAVIHTDFEKGFIRAEVIAYEDFIQFNGENGAKEAGKWRLEGKDYIVQDGDVMHFRFNV             
         :                                                                                                                          
 1jal(B) : LQDLGIEEPGLNRVIRAGYALLNLQTYFTAGVKEVRAWTVSVGATAPKAAAVIHTDFEKGFIRAEVIAYEDFIQFNGENGAKEAGKWRLEGKDYIVQDGDVMHFRFNV             
           _________________275________________________________________________________________________________________             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
11.4
Translation
(A)
-0.1
Closure
(%)
7.0
Bending Residues
( green )
  3 - 5
  41 - 46
  68 - 69
  275 - 276
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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