PROTEIN (F1-ATPASE BETA CHAIN)
Ligand-induced domain movement details

Jmol view of liganded conformation 2

Domain Movement

domain 1 is binding domain(fixed in space) domain 2 is binding domain(fixed in space)

Sequence


           __________________________________________________ 
 2jdi(E) : TTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTV 
         :                                                    
 1h8e(E) : TTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTV 
           __________________________________________________ 

           __________________________________________________ 
 2jdi(E) : RTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPI 
         :                                                    
 1h8e(E) : RTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPI 
           __________________________________________________ 

           _____________124_______________________150________ 
 2jdi(E) : KTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGA 
         :                                                    
 1h8e(E) : KTKQFAAIHAEAPEFVEM--eQEILVTGIKVVDLLAPYAKGGKIGLFGGA 
           _____________124_______________________150________ 

           ___________172____________________________________ 
 2jdi(E) : GVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINL 
         :                                                    
 1h8e(E) : GVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINL 
           ___________172____________________________________ 

           __________________________________________________ 
 2jdi(E) : KDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNI 
         :                                                    
 1h8e(E) : KDATSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNI 
           __________________________________________________ 

           __________________________________________________ 
 2jdi(E) : FRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQ 
         :                                                    
 1h8e(E) : FRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQ 
           __________________________________________________ 

           ____________________331__________________352_356__ 
 2jdi(E) : AIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIM 
         :                                                    
 1h8e(E) : AIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIM 
           ____________________331__________________352_356__ 

           __________________________________________________ 
 2jdi(E) : DPNIVGSEHYDVARGVQKILQDYKSLQDI--------lSEEDKLTVSRAR 
         :                                                    
 1h8e(E) : DPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRAR 
           __________________________________________________ 

           __________________________________________________ 
 2jdi(E) : KIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFY 
         :                                                    
 1h8e(E) : KIQRFLSQPFQVAEVFTGHLGKLVPLKETIKGFQQILAGEYDHLPEQAFY 
           __________________________________________________ 

           ________________                                   
 2jdi(E) : MVGPIEEAVAKADKLA                                   
         :                                                    
 1h8e(E) : MVGPIE**********                                   
           ________________                                   

Details

  Property   Value
 Conformer 1 2jdi(E)
 Conformer 2 1h8e(E)
 Radius gyration for conformer 1 24.39 A
 Radius gyration for conformer 2 24.41 A
 EC Number 3.6.3.14   3.6.1.34  
Click here to see the DynDom results or the famliy
 Trigger ligands ADP600
 Trigger ligands in which conformation Conformation  2
 Conformaton with trigger ligands is compact No
 Spanning ligands Yes
 Residues in enzyme contacting ligands ALA158  ALA421  GLY157  GLY159  GLY161  LYS162  PHE418  PHE424  THR163  TYR345  VAL160  VAL164 
 Residues in extended bending regions contacting ligands ALA158  GLY157  GLY159  GLY161  LYS162  THR163  VAL160 
 Residues in extended bending regions making H-bonds or salt-bridges with ligands GLY159  GLY161  LYS162  THR163  VAL160 
  Residues in extended bending regions with an H-bond between its main chain and ligands GLY159  GLY161  LYS162  THR163  VAL160 
Click here to see the details of H-bonds between ligands and enzyme in PDF format generated by LIGPLOT