Flagellum-specific ATP synthase
Ligand-induced domain movement details

Jmol view of liganded conformation 1

Domain Movement

domain 1 is binding domain(fixed in space) domain 2 is binding domain(fixed in space)

Sequence


           __________________________________________________ 
 2dpy(B) : PAVRRYGRLTRATGLVLEATGLQLPLGATCIIERQDGPETKEVESEVVGF 
         :                                                    
 2dpy(A) : **VRRYGRLTRATGLVLEATGLQLPLGATCIIERQDGPETKEVESEVVGF 
           __________________________________________________ 

           ______________________96__________________________ 
 2dpy(B) : NGQRLFLMPLEEVEGILPGARVYARsGKQLPLGPALLGRVLDGGGKPLDG 
         :                                                    
 2dpy(A) : NGQRLFLMPLEEVEGILPGARVYAR--kQLPLGPALLGRVLDGGGKPLDG 
           ______________________96__________________________ 

           __________________________________________________ 
 2dpy(B) : LPAPDTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGL 
         :                                                    
 2dpy(A) : LPAPDTLETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVGRGQRMGL 
           __________________________________________________ 

           __________________________________________________ 
 2dpy(B) : FAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRA 
         :                                                    
 2dpy(A) : FAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRA 
           __________________________________________________ 

           __________________________________________________ 
 2dpy(B) : RSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMA 
         :                                                    
 2dpy(A) : RSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMA 
           __________________________________________________ 

           __________________________________________________ 
 2dpy(B) : QREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLT 
         :                                                    
 2dpy(A) : QREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLT 
           __________________________________________________ 

           __________________________________________________ 
 2dpy(B) : EGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALI 
         :                                                    
 2dpy(A) : EGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALI 
           __________________________________________________ 

           __________________________________________________ 
 2dpy(B) : TEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLWPQLEA 
         :                                                    
 2dpy(A) : TEQHYARVRLFKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLWPQLEA 
           __________________________________________________ 

           __________________________                         
 2dpy(B) : FLQQGIFERADWEDSLQALDLIFPTV                         
         :                                                    
 2dpy(A) : FLQQGIFERADWEDSLQALDLIFPTV                         
           __________________________                         

Details

  Property   Value
 Conformer 1 2dpy(B)
 Conformer 2 2dpy(A)
 Radius gyration for conformer 1 24.72 A
 Radius gyration for conformer 2 24.61 A
 EC Number 3.6.3.14  
Click here to see the DynDom results or the famliy
 Trigger ligands ADP600
 Trigger ligands in which conformation Conformation  1
 Conformaton with trigger ligands is compact No
 Spanning ligands No
 Residues in enzyme contacting ligands GLY183  GLY185  GLY187  ILE436  LYS188  MET194  SER189  TYR363  VAL190 
 Residues in extended bending regions contacting ligands Null
 Residues in extended bending regions making H-bonds or salt-bridges with ligands Null
  Residues in extended bending regions with an H-bond between its main chain and ligands Null
Click here to see the details of H-bonds between ligands and enzyme in PDF format generated by LIGPLOT