Outer Surface Protein A

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Outer Surface Protein A
  Conformer 1
(PDB) 		2fkj (C)
  Conformer 2
(PDB) 		2fkj (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 57 0.67   216 - 252   255 - 257   261 - 271   289 - 294
2 34 0.54   171 - 180   192 - 215
3 114 0.64   253 - 254   258 - 260   272 - 288   295 - 386
4 35 0.57   147 - 170   181 - 191
5 117 0.52   30 - 146

Sequence


           ___________________________________________________________________________________________________________________145__ 
 2fkj(C) : NSVSVDLPGEMKVLVSKEKNKDGKYDLIATVDKLELKGTSDKNNGSGVLEGVKADKSKVKLTISDDLGQTTLEVFKEDGKTLVSKKVTSKDKSSTEEKFNEKGELSEKKITRADKSSTEE 
         :                                                                                                                          
 2fkj(B) : NSVSVDLPGEMKVLVSKEKNKDGKYDLIATVDKLELKGTSDKNNGSGVLEGVKADKSKVKLTISDDLGQTTLEVFKEDGKTLVSKKVTSKDKSSTEEKFNEKGELSEKKITRADKSSTEE 
           ___________________________________________________________________________________________________________________145__ 

           ____________________170_______180________191_____________________215__________________________________252__257__________ 
 2fkj(C) : KFNEKGELSEKKITRADKSSTEEKFNEKGELSEKKITRADKSSTEEKFNEKGELSEKKITRADKSSTEEKFNEKGELSEKKITRADKSSTEEKFNEKGEVSEKIITRADGTRLEYTGIKS 
         :                                                                                                                          
 2fkj(B) : KFNEKGELSEKKITRADKSSTEEKFNEKGELSEKKITRADKSSTEEKFNEKGELSEKKITRADKSSTEEKFNEKGELSEKKITRADKSSTEEKFNEKGEVSEKIITRADGTRLEYTGIKS 
           ____________________170_______180________191_____________________215__________________________________252__257__________ 

           _271______________288___294_____________________________________________________________________________________________ 
 2fkj(C) : DGSGKAKEVLKGYVLEGTLTAEKTTLVVKEGTVTLSKNISKSGEVSVELNDTDSSAATKKTAAWNSGTSTLTITVNSKKTKDLVFTKENTITVQQYDSNGTKLEGSAVEITKLDEIKNAL 
         :                                                                                                                          
 2fkj(B) : DGSGKAKEVLKGYVLEGTLTAEKTTLVVKEGTVTLSKNISKSGEVSVELNDTDSSAATKKTAAWNSGTSTLTITVNSKKTKDLVFTKENTITVQQYDSNGTKLEGSAVEITKLDEIKNAL 
           _271______________288___294_____________________________________________________________________________________________ 

           _                                                                                                                        
 2fkj(C) : K                                                                                                                        
         :                                                                                                                          
 2fkj(B) : K                                                                                                                        
           _                                                                                                                        

Morph
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Status: Initialising

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Domain Pairs

Fixed Domain Moving Domain Rotation Angle Translation   (A) Closure Bending Residues  
1 2 22.4 0.2 70.3   215 - 216 Bending Region Analysis
1 3 7.7 0.0 32.9   252 - 255   257 - 258   260 - 261   271 - 272   288 - 290   294 - 295 Bending Region Analysis
4 5 16.5 -0.2 85.9   145 - 147 Bending Region Analysis
4 2 15.6 0.1 89.2   170 - 171   180 - 181   191 - 192 Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 4 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 4

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 4 ———› Residue 5

Conformer 2 Contact:
Residue 5 ———› Residue 4

Movement classification: Hinge

PyMOL Script

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